metals

Purpose¶

The heavy metals module simulates user-listed metals across HRU soils and plants. The set of metals simulated is declared in constituents.cs, which populates cs_db%num_metals. Only initial soil and plant concentrations are loaded by a dedicated reader; no separate metal parameter database is read by hmet_hru_aqu_read.

Activation¶

in_parmdb%hmetcom_db is defined in src/input_file_module.f90 with default metals.mtl. No reader in src/ opens this filename, so the parameter database is declared in file.cio but not loaded.

The initial-conditions file is referenced from file.cio via in_init%hmet_soil (default hmet_hru.ini). hmet_hru_aqu_read is called from proc_read.f90.

Files¶

hmet_hru.ini¶

Initial metal concentrations for HRU soils and plants.

Reader: src/hmet_hru_aqu_read.f90
Type: hmet_soil_ini (type cs_soil_init_concentrations) in src/constituent_mass_module.f90. Fields: name, soil(num_metals) (ppm), plt(num_metals) (ppm).
Format: one title line, then per record: a header line, a name line, then num_metals pairs of lines (metal_name, soil_value then metal_name, plt_value) in constituents.cs order.

The same reader allocates cs_hmet_solsor(num_metals).

metals.mtl¶

Declared as in_parmdb%hmetcom_db in input_file_module.f90 (default name metals.mtl). No reader in the current source opens this file. The file is reserved but inert.

constituents.cs. Declares the metal list and sets cs_db%num_metals. The metals block in constit_db_read is read but its name-database cross-walk is commented out, so listed metals only contribute the count.
pesticide module. Same per-object initial-condition pattern.
pathogen module. Same per-object initial-condition pattern.